Name

World Wide Web address

DATABASES and SERVERS

BioInfo

http://BioInfo.PL/meta/

CATH

http://www.biochem.ucl.ac.uk/bsm/cath/

GenBank

http://www.ncbi.nlm.nih.gov/Genbank/GenbankSearch.html

GeneCensus

http://bioinfo.mbb.yale.edu/genome

META-PP

http://cubic.bioc.columbia.edu/pp/doc/meta_intro.html

MODBASE

http://guitar.rockefeller.edu/modbase/

MSD

http://www.rcsb.org/databases.html

NCBI

http://www.ncbi.nlm.nih.gov/

PDB

http://www.rcsb.org/pdb/

PRESAGE

http://presage.berkeley.edu/

PSI

http://www.structuralgenomics.org/

SearchLauncher

http://searchlauncher.bcm.tmc.edu/

SCOP

http://scop.mrc-lmb.cam.ac.uk/scop/

TrEMBL

http://srs.ebi.ac.uk/

WorkBench

http://workbench.sdsc.edu/

FOLD ALIGNMENT

123D

http://www.lecb.ncifcrf.gov/~nicka/123D.html

3D-PSSM

http://www.bmm.icnet.uk/~3dpssm/html/ffrecog.html

BIOINBGU

http://www.cs.bgu.ac.il/~bioinbgu/

BLAST

http://www.ncbi.nlm.nih.gov/BLAST/

DALI

http://www2.ebi.ac.uk/dali/

FASS

http://bioinformatics.burnham-inst.org/FFAS/index.html

FastA

http://www.ebi.ac.uk/fasta3/

FUGUE

http://www-cryst.bioc.cam.ac.uk/~fugue

LOOPP

http://www.tc.cornell.edu/reports/NIH/resource/CompBiologyTools/loopp/

PDB-BLast/FASS

http://bioinformatics.ljcrf.edu/pdb_blast/

PHD, TOPITS

http://www.embl-heidelberg.de/predictprotein/predictprotein.html

PROFIT

http://www.came.sbg.ac.at

SAM-T99/T98

http://www.cse.ucsc.edu/research/compbio/HMM-apps/

THREADER

http://insulin.brunel.ac.uk/threader/threader.html

UCLA-DOE FRSVR

http://www.doe-mbi.ucla.edu/people/frsvr/frsvr.html

SEQUENCE ALIGNMENT

BCM SERVER

http://dot.imgen.bcm.tmc.edu:9331/multi-align/multi-align.html

BLAST2

http://www.ncbi.nlm.nih.gov/gorf/bl2.html

BLOCK MAKER

http://blocks.fhcrc.org/blocks/blockmkr/make_blocks.html

CLUSTALW

http://www2.ebi.ac.uk/clustalw/

FASTA3

http://www2.ebi.ac.uk/fasta3/

MULTALIN

http://pbil.ibcp.fr/

NMR and Structure Related Softwares

ANOLEA

http://www.fundp.ac.be/sciences/biologie/bms/CGI/anolea.html

AQUA

http://urchin.bmrb.wisc.edu/~jurgen/aqua/

ARIA

http://www.pasteur.fr/recherche/unites/Binfs/aria/

Autoassign/Autopeak

http://www-nmr.cabm.rutgers.edu/NMRsoftware/nmr_software.html

AUTOPSY

http://www.mol.biol.ethz.ch/wuthrich/software/autopsy/index.html

BIOTECH

http://biotech.embl-ebi.ac.uk:8400/

CNS

http://cns.csb.yale.edu/

DYANA

http://www.mol.biol.ethz.ch/wuthrich/software/dyana/

ERRAT

http://www.doe-mbi.ucla.edu/errat_server.html

GARANT

http://www.mol.biol.ethz.ch/wuthrich/software/garant/index.html

ModelFree

http://cpmcnet.columbia.edu/dept/gsas/biochem/labs/palmer/software/modelfree.html

MOLMOL

http://www.mol.biol.ethz.ch/wuthrich/software/molmol/

NMRView

http://www.nmrview.com/

NMRpipe

http://spin.niddk.nih.gov/bax/software/NMRPipe/index.html

PROCHECK

http://www.biochem.ucl.ac.uk/~roman/procheck/procheck.html

ProsaII

http://www.came.sbg.ac.at

PROVE

http://www.ucmb.ulb.ac.be/UCMB/PROVE

SQUID

http://www.yorvic.york.ac.uk/~oldfield/squid

TALOS

http://spin.niddk.nih.gov/bax/software/TALOS/info.html

VERIFY3D

http://www.doe-mbi.ucla.edu/verify3d.html

VMD

http://www.ks.uiuc.edu/Research/vmd/

WHATCHECK

http://www.sander.embl-heidelberg.de/whatcheck/

XPLOR

http://atb.csb.yale.edu/xplor/

MODELING

3D-JIGSAW

http://www.bmm.icnet.uk/servers/3djigsaw/

CPH-Models

http://www.cbs.dtu.dk/services/CPHmodels/

COMPOSER

http://www-cryst.bioc.cam.ac.uk/

CONGEN

http://www.congenomics.com/congen/congen.html

DRAGON

http://mathbio.nimr.mrc.ac.uk/aaszodi/ug.html

FAMS

http://physchem.pharm.kitasato-u.ac.jp/FAMS/fams.html

ICM

http://www.molsoft.com

MODELLER

http://guitar.rockefeller.edu/modeller/modeller.html

QUANTAÈ

http://www.accelrys.com/

SYBYL

http://www.tripos.com

SCWRL

http://www.fccc.edu/research/labs/dunbrack/scwrl/

SDSC1

http://cl.sdsc.edu/hm.html

SWISS-MODEL

http://www.expasy.ch/swissmod/SWISS-MODEL.html

WHAT IF

http://www.cmbi.kun.nl/whatif/